HL_8J1Z_026

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

8J1Z|1|a|U|958, 8J1Z|1|a|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8J1Z_026 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.1439

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8J1Z|1|a|G|954
8J1Z|1|a|PSU|955
8J1Z|1|a|G|956
8J1Z|1|a|C|957
8J1Z|1|a|U|958
8J1Z|1|a|A|959
8J1Z|1|a|A|960
8J1Z|1|a|C|961
8J1Z|1|a|G|962
8J1Z|1|a|U|963

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA