HL_8J1Z_040

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8J1Z|1|a|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8J1Z_040 not in the Motif Atlas

Geometric match to HL_4JF2_003

Geometric discrepancy: 0.0685

The information below is about HL_4JF2_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8J1Z|1|a|C|1691
8J1Z|1|a|U|1692
8J1Z|1|a|U|1693
8J1Z|1|a|C|1694
8J1Z|1|a|G|1695
8J1Z|1|a|G|1696

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2