HL_8J1Z_068
3D structure
- PDB id
- 8J1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The global structure of pre50S related to DbpA in state3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 8J1Z|1|b|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8J1Z_068 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.1445
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8J1Z|1|b|A|34
8J1Z|1|b|C|35
8J1Z|1|b|C|36
8J1Z|1|b|C|37
8J1Z|1|b|C|38
8J1Z|1|b|A|39
8J1Z|1|b|U|40
8J1Z|1|b|G|41
8J1Z|1|b|C|42
8J1Z|1|b|C|43
8J1Z|1|b|G|44
8J1Z|1|b|A|45
8J1Z|1|b|A|46
8J1Z|1|b|C|47
8J1Z|1|b|U|48
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
- Chain n
- 50S ribosomal protein L18
Coloring options: