HL_8J72_001

3D structure

PDB id

8J72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of mammalian Trim71 in complex with lncRNA Trincr1

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CAAAG

Length

5 nucleotides

Bulged bases

8J72|1|C|A|5

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69858.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

8J72|1|C|C|4
8J72|1|C|A|5
8J72|1|C|A|6
8J72|1|C|A|7
8J72|1|C|G|8

Current chains

Chain C

lncRNA Trincr1

Nearby chains

Chain A

E3 ubiquitin-protein ligase TRIM71

Chain B

E3 ubiquitin-protein ligase TRIM71