HL_8JDJ_010

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8JDJ|1|D|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_010 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4304

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8JDJ|1|D|U|204
8JDJ|1|D|C|205
8JDJ|1|D|U|206
8JDJ|1|D|G|207
8JDJ|1|D|A|208
8JDJ|1|D|U|209
8JDJ|1|D|C|210
8JDJ|1|D|G|211

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain d

60S ribosomal protein L26

Chain j

60S ribosomal protein L32