HL_8JDJ_019

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

8JDJ|1|D|G|1178, 8JDJ|1|D|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|G|1171
8JDJ|1|D|C|1172
8JDJ|1|D|G|1173
8JDJ|1|D|G|1174
8JDJ|1|D|A|1175
8JDJ|1|D|C|1176
8JDJ|1|D|U|1177
8JDJ|1|D|G|1178
8JDJ|1|D|U|1179
8JDJ|1|D|C|1180
8JDJ|1|D|C|1181
8JDJ|1|D|C|1182
8JDJ|1|D|C|1183
8JDJ|1|D|A|1184
8JDJ|1|D|G|1185
8JDJ|1|D|U|1186
8JDJ|1|D|G|1187
8JDJ|1|D|C|1188
8JDJ|1|D|G|1189
8JDJ|1|D|C|1190

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L5

Chain O

60S ribosomal protein L10-like