HL_8JDJ_020
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- C(OMG)UCUUG(1MA)AAC(A2M)CG
- Length
- 14 nucleotides
- Bulged bases
- 8JDJ|1|D|C|1325
- QA status
- Modified nucleotides: OMG, 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDJ_020 not in the Motif Atlas
- Geometric match to HL_4V9F_011
- Geometric discrepancy: 0.116
- The information below is about HL_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
8JDJ|1|D|C|1315
8JDJ|1|D|OMG|1316
8JDJ|1|D|U|1317
8JDJ|1|D|C|1318
8JDJ|1|D|U|1319
8JDJ|1|D|U|1320
8JDJ|1|D|G|1321
8JDJ|1|D|1MA|1322
8JDJ|1|D|A|1323
8JDJ|1|D|A|1324
8JDJ|1|D|C|1325
8JDJ|1|D|A2M|1326
8JDJ|1|D|C|1327
8JDJ|1|D|G|1328
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L3
- Chain I
- 60S ribosomal protein L4
- Chain f
- 60S ribosomal protein L27a
- Chain j
- 60S ribosomal protein L32
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