HL_8JDJ_026
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDJ_026 not in the Motif Atlas
- Homologous match to HL_5TBW_019
- Geometric discrepancy: 0.0687
- The information below is about HL_5TBW_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8JDJ|1|D|G|1561
8JDJ|1|D|G|1562
8JDJ|1|D|A|1563
8JDJ|1|D|A|1564
8JDJ|1|D|A|1565
8JDJ|1|D|C|1566
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 40S ribosomal protein S11
- Chain 9
- 40S ribosomal protein S13
- Chain u
- 60S ribosomal protein L37a
- Chain w
- Small subunit ribosomal RNA; SSU rRNA
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