HL_8JDJ_036

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_036 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1534

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8JDJ|1|D|A|2376
8JDJ|1|D|C|2377
8JDJ|1|D|G|2378
8JDJ|1|D|A|2379
8JDJ|1|D|G|2380
8JDJ|1|D|A|2381
8JDJ|1|D|A|2382
8JDJ|1|D|C|2383
8JDJ|1|D|U|2384

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L17

Chain W

60S ribosomal protein L19

Chain i

60S ribosomal protein L31