HL_8JDJ_038

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_038 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1767

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8JDJ|1|D|C|2458
8JDJ|1|D|G|2459
8JDJ|1|D|A|2460
8JDJ|1|D|G|2461
8JDJ|1|D|C|2462
8JDJ|1|D|G|2463

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L15

Chain o

60S ribosomal protein L37