HL_8JDJ_049

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8JDJ|1|D|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_049 not in the Motif Atlas

Geometric match to HL_4V9F_044

Geometric discrepancy: 0.0773

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8JDJ|1|D|C|2872
8JDJ|1|D|U|2873
8JDJ|1|D|U|2874
8JDJ|1|D|C|2875
8JDJ|1|D|G|2876
8JDJ|1|D|G|2877

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain s

60S ribosomal protein L41

Chain u

60S ribosomal protein L37a

Chain w

Small subunit ribosomal RNA; SSU rRNA