HL_8JDJ_054
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- G(PSU)A(A2M)C(PSU)A(PSU)GAC
- Length
- 11 nucleotides
- Bulged bases
- 8JDJ|1|D|C|3761, 8JDJ|1|D|A|3763
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDJ_054 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.3086
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
8JDJ|1|D|G|3757
8JDJ|1|D|PSU|3758
8JDJ|1|D|A|3759
8JDJ|1|D|A2M|3760
8JDJ|1|D|C|3761
8JDJ|1|D|PSU|3762
8JDJ|1|D|A|3763
8JDJ|1|D|PSU|3764
8JDJ|1|D|G|3765
8JDJ|1|D|A|3766
8JDJ|1|D|C|3767
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain A
- mRNA
- Chain AB
- 40S ribosomal protein S15
- Chain B
- Transfer RNA; tRNA
- Chain C
- Transfer RNA; tRNA
- Chain w
- Small subunit ribosomal RNA; SSU rRNA
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