HL_8JDJ_060

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_060 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.1248

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8JDJ|1|D|G|4250
8JDJ|1|D|A|4251
8JDJ|1|D|C|4252
8JDJ|1|D|A|4253
8JDJ|1|D|G|4254
8JDJ|1|D|A|4255
8JDJ|1|D|A|4256
8JDJ|1|D|A|4257
8JDJ|1|D|C|4258

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L11