HL_8JDJ_071

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8JDJ|1|D|G|4694, 8JDJ|1|D|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1713

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8JDJ|1|D|C|4688
8JDJ|1|D|PSU|4689
8JDJ|1|D|G|4690
8JDJ|1|D|A|4691
8JDJ|1|D|A|4692
8JDJ|1|D|C|4693
8JDJ|1|D|G|4694
8JDJ|1|D|C|4695
8JDJ|1|D|C|4696
8JDJ|1|D|U|4697
8JDJ|1|D|C|4698
8JDJ|1|D|U|4699
8JDJ|1|D|A|4700
8JDJ|1|D|A|4701
8JDJ|1|D|G|4702

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L9

Chain T

60S ribosomal protein L13a

Chain r

Ubiquitin-60S ribosomal protein L40