HL_8JDJ_074

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8JDJ|1|D|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_074 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.0927

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8JDJ|1|D|G|4975
8JDJ|1|D|U|4976
8JDJ|1|D|A|4977
8JDJ|1|D|G|4978
8JDJ|1|D|A|4979
8JDJ|1|D|C|4980
8JDJ|1|D|G|4981
8JDJ|1|D|A|4982
8JDJ|1|D|C|4983

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain U

60S ribosomal protein L17