HL_8JDJ_092
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- ACU(PSU)UAA(A2M)UCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDJ_092 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.2393
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8JDJ|1|w|A|569
8JDJ|1|w|C|570
8JDJ|1|w|U|571
8JDJ|1|w|PSU|572
8JDJ|1|w|U|573
8JDJ|1|w|A|574
8JDJ|1|w|A|575
8JDJ|1|w|A2M|576
8JDJ|1|w|U|577
8JDJ|1|w|C|578
8JDJ|1|w|C|579
8JDJ|1|w|U|580
8JDJ|1|w|U|581
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S9
- Chain AK
- 40S ribosomal protein S24
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