HL_8JDJ_113

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

8JDJ|1|w|G|1849

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_113 not in the Motif Atlas

Homologous match to HL_8C3A_227

Geometric discrepancy: 0.1421

The information below is about HL_8C3A_227

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8JDJ|1|w|G|1847
8JDJ|1|w|U|1848
8JDJ|1|w|G|1849
8JDJ|1|w|MA6|1850
8JDJ|1|w|MA6|1851
8JDJ|1|w|C|1852

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain s

60S ribosomal protein L41