HL_8JDJ_126

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_126 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3597

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8JDJ|1|w|U|1114
8JDJ|1|w|U|1115
8JDJ|1|w|C|1116
8JDJ|1|w|C|1117
8JDJ|1|w|C|1118
8JDJ|1|w|A|1119

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S27

Chain y

40S ribosomal protein S3a