HL_8JDK_003
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- G(5MU)(PSU)CG(1MA)UUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU, 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_003 not in the Motif Atlas
- Homologous match to HL_3KFU_006
- Geometric discrepancy: 0.1151
- The information below is about HL_3KFU_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8JDK|1|B|G|52
8JDK|1|B|5MU|53
8JDK|1|B|PSU|54
8JDK|1|B|C|55
8JDK|1|B|G|56
8JDK|1|B|1MA|57
8JDK|1|B|U|58
8JDK|1|B|U|59
8JDK|1|B|C|60
Current chains
- Chain B
- tRNA (Asp)
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 60S ribosomal protein L11
- Chain t
- 60S ribosomal protein L36a
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