HL_8JDK_010

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8JDK|1|D|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_010 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4249

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8JDK|1|D|U|204
8JDK|1|D|C|205
8JDK|1|D|U|206
8JDK|1|D|G|207
8JDK|1|D|A|208
8JDK|1|D|U|209
8JDK|1|D|C|210
8JDK|1|D|G|211

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain d

60S ribosomal protein L26

Chain j

60S ribosomal protein L32