HL_8JDK_014
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 8JDK|1|D|G|315, 8JDK|1|D|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_014 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1886
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8JDK|1|D|G|314
8JDK|1|D|G|315
8JDK|1|D|U|316
8JDK|1|D|A|317
8JDK|1|D|A|318
8JDK|1|D|A|319
8JDK|1|D|C|320
8JDK|1|D|U|321
8JDK|1|D|C|322
8JDK|1|D|C|323
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain S
- 60S ribosomal protein L15
- Chain f
- 60S ribosomal protein L27a
- Chain n
- 60S ribosomal protein L36
- Chain t
- 60S ribosomal protein L36a
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