HL_8JDK_016

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_016 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.243

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8JDK|1|D|U|392
8JDK|1|D|U|393
8JDK|1|D|G|394
8JDK|1|D|A|395
8JDK|1|D|A|396
8JDK|1|D|G|397
8JDK|1|D|A2M|398
8JDK|1|D|G|399

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L17