HL_8JDK_018

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGGCCC

Length

6 nucleotides

Bulged bases

8JDK|1|D|C|903

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_018 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2683

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8JDK|1|D|G|758
8JDK|1|D|G|759
8JDK|1|D|G|760
8JDK|1|D|C|903
8JDK|1|D|C|904
8JDK|1|D|C|905

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L9