HL_8JDK_019

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

8JDK|1|D|G|1178, 8JDK|1|D|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|G|1171
8JDK|1|D|C|1172
8JDK|1|D|G|1173
8JDK|1|D|G|1174
8JDK|1|D|A|1175
8JDK|1|D|C|1176
8JDK|1|D|U|1177
8JDK|1|D|G|1178
8JDK|1|D|U|1179
8JDK|1|D|C|1180
8JDK|1|D|C|1181
8JDK|1|D|C|1182
8JDK|1|D|C|1183
8JDK|1|D|A|1184
8JDK|1|D|G|1185
8JDK|1|D|U|1186
8JDK|1|D|G|1187
8JDK|1|D|C|1188
8JDK|1|D|G|1189
8JDK|1|D|C|1190

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L5

Chain O

60S ribosomal protein L10-like