HL_8JDK_021
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CUCGCACGAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8JDK|1|D|C|1365, 8JDK|1|D|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_021 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.282
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8JDK|1|D|C|1363
8JDK|1|D|U|1364
8JDK|1|D|C|1365
8JDK|1|D|G|1366
8JDK|1|D|C|1367
8JDK|1|D|A|1368
8JDK|1|D|C|1369
8JDK|1|D|G|1370
8JDK|1|D|A|1371
8JDK|1|D|A|1372
8JDK|1|D|A|1373
8JDK|1|D|G|1374
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain F
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain I
- 60S ribosomal protein L4
- Chain Q
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L15
- Chain d
- 60S ribosomal protein L26
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