HL_8JDK_023

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_023 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3942

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8JDK|1|D|C|1405
8JDK|1|D|G|1406
8JDK|1|D|C|1407
8JDK|1|D|G|1408
8JDK|1|D|C|1409
8JDK|1|D|U|1410
8JDK|1|D|C|1411
8JDK|1|D|G|1412

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L29