HL_8JDK_032

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8JDK|1|D|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_032 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.0828

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8JDK|1|D|G|1864
8JDK|1|D|G|1865
8JDK|1|D|U|1866
8JDK|1|D|A|1867
8JDK|1|D|A|1868
8JDK|1|D|G|1869
8JDK|1|D|C|1870

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L10-like