HL_8JDK_034

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_034 not in the Motif Atlas

Geometric match to HL_4V9F_021

Geometric discrepancy: 0.1976

The information below is about HL_4V9F_021

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8JDK|1|D|C|2257
8JDK|1|D|C|2258
8JDK|1|D|G|2259
8JDK|1|D|C|2260
8JDK|1|D|G|2261

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain L

60S ribosomal protein L7

Chain v

60S ribosomal protein L28