HL_8JDK_036
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_036 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1349
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8JDK|1|D|A|2376
8JDK|1|D|C|2377
8JDK|1|D|G|2378
8JDK|1|D|A|2379
8JDK|1|D|G|2380
8JDK|1|D|A|2381
8JDK|1|D|A|2382
8JDK|1|D|C|2383
8JDK|1|D|U|2384
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain U
- 60S ribosomal protein L17
- Chain W
- 60S ribosomal protein L19
- Chain i
- 60S ribosomal protein L31
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