HL_8JDK_040

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8JDK|1|D|U|2530, 8JDK|1|D|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_040 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.088

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8JDK|1|D|G|2523
8JDK|1|D|U|2524
8JDK|1|D|U|2525
8JDK|1|D|C|2526
8JDK|1|D|A|2527
8JDK|1|D|G|2528
8JDK|1|D|A|2529
8JDK|1|D|U|2530
8JDK|1|D|C|2531
8JDK|1|D|C|2532

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L19

Chain c

60S ribosomal protein L23a

Chain l

60S ribosomal protein L34