HL_8JDK_053

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GA(A2M)GAAAU(PSU)C

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_053 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2658

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8JDK|1|D|G|3722
8JDK|1|D|A|3723
8JDK|1|D|A2M|3724
8JDK|1|D|G|3725
8JDK|1|D|A|3726
8JDK|1|D|A|3727
8JDK|1|D|A|3728
8JDK|1|D|U|3729
8JDK|1|D|PSU|3730
8JDK|1|D|C|3731

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain n

60S ribosomal protein L36

Chain t

60S ribosomal protein L36a