HL_8JDK_056

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8JDK|1|D|A|3876, 8JDK|1|D|A|3877, 8JDK|1|D|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_056 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0588

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8JDK|1|D|G|3873
8JDK|1|D|G|3874
8JDK|1|D|G|3875
8JDK|1|D|A|3876
8JDK|1|D|A|3877
8JDK|1|D|C|3878
8JDK|1|D|G|3879
8JDK|1|D|G|3880
8JDK|1|D|G|3881
8JDK|1|D|C|3882

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain j

60S ribosomal protein L32