HL_8JDK_057

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GCGCGCC

Length

7 nucleotides

Bulged bases

8JDK|1|D|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_057 not in the Motif Atlas

Geometric match to HL_4LFB_018

Geometric discrepancy: 0.2444

The information below is about HL_4LFB_018

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8JDK|1|D|G|4139
8JDK|1|D|C|4140
8JDK|1|D|G|4141
8JDK|1|D|C|4142
8JDK|1|D|G|4143
8JDK|1|D|C|4144
8JDK|1|D|C|4145

Current chains

Chain D

28S ribosomal RNA

Nearby chains