HL_8JDK_061

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_061 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1123

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8JDK|1|D|C|4270
8JDK|1|D|A|4271
8JDK|1|D|G|4272
8JDK|1|D|A|4273
8JDK|1|D|A|4274
8JDK|1|D|G|4275
8JDK|1|D|G|4276
8JDK|1|D|G|4277

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain O

60S ribosomal protein L10-like

Chain Y

60S ribosomal protein L21

Chain t

60S ribosomal protein L36a