HL_8JDK_071

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8JDK|1|D|G|4694, 8JDK|1|D|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1688

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8JDK|1|D|C|4688
8JDK|1|D|PSU|4689
8JDK|1|D|G|4690
8JDK|1|D|A|4691
8JDK|1|D|A|4692
8JDK|1|D|C|4693
8JDK|1|D|G|4694
8JDK|1|D|C|4695
8JDK|1|D|C|4696
8JDK|1|D|U|4697
8JDK|1|D|C|4698
8JDK|1|D|U|4699
8JDK|1|D|A|4700
8JDK|1|D|A|4701
8JDK|1|D|G|4702

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L9

Chain T

60S ribosomal protein L13a

Chain r

Ubiquitin-60S ribosomal protein L40