HL_8JDK_086

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8JDK|1|w|A|292, 8JDK|1|w|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_086 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3795

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8JDK|1|w|G|288
8JDK|1|w|G|289
8JDK|1|w|U|290
8JDK|1|w|G|291
8JDK|1|w|A|292
8JDK|1|w|C|293
8JDK|1|w|U|294
8JDK|1|w|C|295

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain 3

40S ribosomal protein S6

Chain 8

40S ribosomal protein S11