HL_8JDK_087

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|w|G|377
8JDK|1|w|U|378
8JDK|1|w|C|379
8JDK|1|w|G|380
8JDK|1|w|C|381
8JDK|1|w|C|382
8JDK|1|w|G|383
8JDK|1|w|U|384
8JDK|1|w|G|385
8JDK|1|w|C|386
8JDK|1|w|C|387

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 5

40S ribosomal protein S8

Chain 8

40S ribosomal protein S11