HL_8JDK_090

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CAU(OMC)CAAGG(A2M)AG

Length

12 nucleotides

Bulged bases

8JDK|1|w|A|464

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|w|C|459
8JDK|1|w|A|460
8JDK|1|w|U|461
8JDK|1|w|OMC|462
8JDK|1|w|C|463
8JDK|1|w|A|464
8JDK|1|w|A|465
8JDK|1|w|G|466
8JDK|1|w|G|467
8JDK|1|w|A2M|468
8JDK|1|w|A|469
8JDK|1|w|G|470

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S6

Chain AK

40S ribosomal protein S24

Chain a

60S ribosomal protein L23