HL_8JDK_097

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAGGUGAAAU(PSU)C

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|w|G|956
8JDK|1|w|A|957
8JDK|1|w|G|958
8JDK|1|w|G|959
8JDK|1|w|U|960
8JDK|1|w|G|961
8JDK|1|w|A|962
8JDK|1|w|A|963
8JDK|1|w|A|964
8JDK|1|w|U|965
8JDK|1|w|PSU|966
8JDK|1|w|C|967

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 2

40S ribosomal protein S5

Chain A

mRNA

Chain AA

40S ribosomal protein S14

Chain D

Large subunit ribosomal RNA; LSU rRNA