HL_8JDK_110

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

8JDK|1|w|U|1621, 8JDK|1|w|U|1622, 8JDK|1|w|A|1623

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|w|G|1613
8JDK|1|w|A|1614
8JDK|1|w|U|1615
8JDK|1|w|U|1616
8JDK|1|w|G|1617
8JDK|1|w|C|1618
8JDK|1|w|A|1619
8JDK|1|w|A|1620
8JDK|1|w|U|1621
8JDK|1|w|U|1622
8JDK|1|w|A|1623
8JDK|1|w|U|1624
8JDK|1|w|PSU|1625
8JDK|1|w|C|1626

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S15

Chain AE

40S ribosomal protein S18

Chain AF

40S ribosomal protein S19

Chain AP

40S ribosomal protein S29