3D structure

PDB id
8JDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.26 Å

Loop

Sequence
GUG(MA6)(MA6)C
Length
6 nucleotides
Bulged bases
8JDK|1|w|G|1849
QA status
Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8JDK_112 not in the Motif Atlas
Homologous match to HL_8C3A_227
Geometric discrepancy: 0.1297
The information below is about HL_8C3A_227
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
302

Unit IDs

8JDK|1|w|G|1847
8JDK|1|w|U|1848
8JDK|1|w|G|1849
8JDK|1|w|MA6|1850
8JDK|1|w|MA6|1851
8JDK|1|w|C|1852

Current chains

Chain w
18S ribosomal RNA

Nearby chains

Chain D
Large subunit ribosomal RNA; LSU rRNA
Chain s
60S ribosomal protein L41

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2793 s