HL_8JDK_115

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UGAAG(A2M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_115 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.1314

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8JDK|1|D|U|393
8JDK|1|D|G|394
8JDK|1|D|A|395
8JDK|1|D|A|396
8JDK|1|D|G|397
8JDK|1|D|A2M|398

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L17