HL_8JDK_127

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_127 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3431

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87381.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

8JDK|1|w|U|1114
8JDK|1|w|U|1115
8JDK|1|w|C|1116
8JDK|1|w|C|1117
8JDK|1|w|C|1118
8JDK|1|w|A|1119

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S27

Chain y

40S ribosomal protein S3a