HL_8JDL_003
3D structure
- PDB id
- 8JDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- G(5MU)(PSU)CG(1MA)UUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU, 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDL_003 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.1478
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8JDL|1|B|G|53
8JDL|1|B|5MU|54
8JDL|1|B|PSU|55
8JDL|1|B|C|56
8JDL|1|B|G|57
8JDL|1|B|1MA|58
8JDL|1|B|U|59
8JDL|1|B|U|60
8JDL|1|B|C|61
Current chains
- Chain B
- tRNA (Tyr)
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 60S ribosomal protein L11
- Chain t
- 60S ribosomal protein L36a
Coloring options: