HL_8JDL_016

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

8JDL|1|D|G|1178, 8JDL|1|D|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|G|1171
8JDL|1|D|C|1172
8JDL|1|D|G|1173
8JDL|1|D|G|1174
8JDL|1|D|A|1175
8JDL|1|D|C|1176
8JDL|1|D|U|1177
8JDL|1|D|G|1178
8JDL|1|D|U|1179
8JDL|1|D|C|1180
8JDL|1|D|C|1181
8JDL|1|D|C|1182
8JDL|1|D|C|1183
8JDL|1|D|A|1184
8JDL|1|D|G|1185
8JDL|1|D|U|1186
8JDL|1|D|G|1187
8JDL|1|D|C|1188
8JDL|1|D|G|1189
8JDL|1|D|C|1190

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L5

Chain O

60S ribosomal protein L10-like