HL_8JDL_036

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAUGGCCUCCGUU

Length

13 nucleotides

Bulged bases

8JDL|1|D|C|2488, 8JDL|1|D|C|2489, 8JDL|1|D|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|G|2483
8JDL|1|D|A|2484
8JDL|1|D|U|2485
8JDL|1|D|G|2486
8JDL|1|D|G|2487
8JDL|1|D|C|2488
8JDL|1|D|C|2489
8JDL|1|D|U|2490
8JDL|1|D|C|2491
8JDL|1|D|C|2492
8JDL|1|D|G|2493
8JDL|1|D|U|2494
8JDL|1|D|U|2495

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain F

5.8S ribosomal RNA; 5.8S rRNA

Chain c

60S ribosomal protein L23a