HL_8JDL_040

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AGUUCUCUU(PSU)U

Length

11 nucleotides

Bulged bases

8JDL|1|D|U|2631

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|A|2623
8JDL|1|D|G|2624
8JDL|1|D|U|2625
8JDL|1|D|U|2626
8JDL|1|D|C|2627
8JDL|1|D|U|2628
8JDL|1|D|C|2629
8JDL|1|D|U|2630
8JDL|1|D|U|2631
8JDL|1|D|PSU|2632
8JDL|1|D|U|2633

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L19

Chain Z

60S ribosomal protein L22