HL_8JDL_087

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CAU(OMC)CAAGG(A2M)AG

Length

12 nucleotides

Bulged bases

8JDL|1|w|A|464

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|w|C|459
8JDL|1|w|A|460
8JDL|1|w|U|461
8JDL|1|w|OMC|462
8JDL|1|w|C|463
8JDL|1|w|A|464
8JDL|1|w|A|465
8JDL|1|w|G|466
8JDL|1|w|G|467
8JDL|1|w|A2M|468
8JDL|1|w|A|469
8JDL|1|w|G|470

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S6

Chain AK

40S ribosomal protein S24

Chain a

60S ribosomal protein L23