HL_8JDL_089

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

8JDL|1|w|U|573

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDL_089 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.3417

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8JDL|1|w|A|569
8JDL|1|w|C|570
8JDL|1|w|U|571
8JDL|1|w|PSU|572
8JDL|1|w|U|573
8JDL|1|w|A|574
8JDL|1|w|A|575
8JDL|1|w|A2M|576
8JDL|1|w|U|577
8JDL|1|w|C|578
8JDL|1|w|C|579
8JDL|1|w|U|580
8JDL|1|w|U|581

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S9

Chain AK

40S ribosomal protein S24