HL_8JDL_113

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

8JDL|1|D|G|1408, 8JDL|1|D|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDL_113 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3743

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8JDL|1|D|C|1405
8JDL|1|D|G|1406
8JDL|1|D|C|1407
8JDL|1|D|G|1408
8JDL|1|D|C|1409
8JDL|1|D|U|1410
8JDL|1|D|C|1411
8JDL|1|D|G|1412

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L29